Welcome to Mistic’s documentation!¶
- 1. Introduction
- 2. Functions
- 2.1. get_cell_coords(pt,a)
- 2.2. get_neighbours(coords,nx,ny,cells)
- 2.3. point_valid(pt,a,nx,ny,cells,samples,r)
- 2.4. get_point(k, refpt,r,a,nx,ny,cells,samples)
- 2.5. button_callback()
- 2.6. create_figure(stack_montage_flag)
- 2.7. generate_stack_montage(chk_box_marker_sm, rb_imtech_val, LABELS_MARKERS)
- 2.8. generate_image_tSNE(chk_box_marker,rb_val,rb_rs_val, rb_shf_val,rb_imtech_val,mc,wc,LABELS_MARKERS)
- 2.9. draw_tSNE_scatter(tsne1,file_name_hover,cluster_ms_list)
- 3. Requirements
- 4. Code Installation
- 5. Mistic experiments
- 5.1. Datasets used to test Mistic
- 5.2. Non-small cell lung cancer
- 5.3. Lung adenocarcinoma metastasis to lymph node
- 5.4. Primary lung squamous cell carcinoma
- 5.5. Tissue Microarray cores for Endometrial cancer
- 5.6. Human FFPE Tonsil data
- 5.7. Human FFPE Breast adenocarcinoma
- 5.8. Human FFPE Tonsil demo data from Akoya
- 5.9. Human Colorectal carcinoma
- 6. Vignettes on t-CyCIF data
- 7. Vignettes on Vectra data